Ingest Notebook Map

Use this page to choose the right notebook quickly.

Default choice

• 00_ingest_gui_workflow_adamacs_ingest_v2.ipynb

  • default for almost all ingest runs

  • session discovery + GUI commit flow

If you need more than the GUI

Need	Notebook
Check pipeline/schema connectivity	01_pipeline.ipynb
Manual subject/session/scan insert	02_manual_insert.ipynb, 04_scan_insert.ipynb
PyRAT import	03_pyrat_insert.ipynb
Imaging processing follow-up	07_imaging_processing.ipynb
Suite2p parameter work	12_suite2p_parameters.ipynb
DLC troubleshooting	13_DLClive_ingest.ipynb, 23_batch_dlc_eye_ingestion.ipynb
Behavior/sync troubleshooting	06_behavior_insert.ipynb, 09_insert_bpod_harp.ipynb
Server-side diagnostics	99 ServerIngestDebug.ipynb

Recommended order for new users

1. 00_ingest_gui_workflow_adamacs_ingest_v2.ipynb

2. 01_pipeline.ipynb

3. Only open modality-specific notebooks if the GUI run needs follow-up.