External References
Use this page when you need implementation details from upstream projects behind ADAMACS.
DataJoint core
DataJoint Python core docs: https://docs.datajoint.com/core/datajoint-python/latest/
Table dependencies and key design: https://docs.datajoint.com/core/datajoint-python/latest/design/tables/dependencies/
Query operators (
&,*, projection, restriction): https://docs.datajoint.com/core/datajoint-python/latest/query/operators/DataJoint core concepts overview: https://www.datajoint.com/docs/core/
DataJoint Elements used in ADAMACS
Elements index: https://docs.datajoint.com/elements/
Element Session: https://docs.datajoint.com/elements/element-session/latest/
Element Event concepts: https://docs.datajoint.com/elements/element-event/0.2/concepts/
Element Calcium Imaging: https://docs.datajoint.com/elements/element-calcium-imaging/latest/
Element DeepLabCut: https://docs.datajoint.com/elements/element-deeplabcut/latest/
Suite2p (imaging processing backend)
Suite2p docs: https://suite2p.readthedocs.io/en/latest/
Installation: https://suite2p.readthedocs.io/en/latest/installation/
Parameters: https://suite2p.readthedocs.io/en/latest/parameters/
Source code: https://github.com/MouseLand/suite2p
DeepLabCut (pose backend)
DeepLabCut docs: https://deeplabcut.github.io/DeepLabCut/
Source code: https://github.com/DeepLabCut/DeepLabCut
Element integration in ADAMACS: https://docs.datajoint.com/elements/element-deeplabcut/latest/
DISK (imputation backend)
DISK source code and README: https://github.com/bozeklab/DISK
ADAMACS DISK schema chapter:
Analysis -> Schema Chapters -> disk
CASCADE (activity inference backend)
CASCADE source code and README: https://github.com/HelmchenLabSoftware/Cascade
ADAMACS operations policy:
Common -> Lab Operations Playbook(CASCADE workflow policy)